A guiding potential method for evaluating the bending rigidity of tensionless lipid membranes from molecular simulation.

نویسندگان

  • Shuhei Kawamoto
  • Takenobu Nakamura
  • Steven O Nielsen
  • Wataru Shinoda
چکیده

A new method is proposed to estimate the bending rigidity of lipid membranes from molecular dynamics simulations. An external cylindrical guiding potential is used to impose a sinusoidal deformation to a planar membrane. The bending rigidity is obtained from the mean force acting on the cylinder by calibrating against a discretized Helfrich model that accounts for thermal fluctuations of the membrane surface. The method has been successfully applied to a dimyristoyl phosphatidylcholine bilayer simulated with a coarse-grained model. A well-converged bending rigidity was obtained for the tension-free membrane and showed reasonable agreement with that obtained from the height fluctuation spectrum.

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عنوان ژورنال:
  • The Journal of chemical physics

دوره 139 3  شماره 

صفحات  -

تاریخ انتشار 2013